YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	clc-4
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSSLTQLVF GVVMLGAIAL TLGATFSDKW RTVEKDLLDL YEDVQRNHTE RLTGILPFLC  60
   61 EDGAVGCAGF WKEMKPYEKI VAICMIAALI LEIVAFVWNF LTSCTCCFKK YLLHPLSPLS 120
  121 FLITIFLTVA IGVFYYNSDE IKDDVNIQKI WDAEAKDLNI NIGSAFWMAV GAWCLVVIDT 180
  181 ILASFAIFFA QHGV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.45
Transmembrane Helix	7	27	0.76
Non-Cytoplasmic	28	79	0.61
Transmembrane Helix	80	102	0.92
Cytoplasmic	103	111	0.61
Transmembrane Helix	112	136	0.84
Non-Cytoplasmic	137	165	0.66
Transmembrane Helix	166	190	0.87
Cytoplasmic	191	194	0.61