YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-122
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDNKIKAYR LIGYAAVSLS AVGILSVCIT LPLVYSYVSN LRSQMHSELR HCRDTVNTVY  60
   61 ATAVAMPALP GRGNRTARQA GYDVAVQDAP AQEHNSCDGC CLPGAAGSVG AAGRPGTPGR 120
  121 PGAPGAPGHP GKPPQSPCEP LTPPPCPACP PGPPGAPGAP GKPGSEGPPG PPGHDGPNGG 180
  181 PGQPGQPGPH GPNGHPGKPG SQGPPGPPGH SDEPKPGQPG QPGRAGPRGP RGVAGIKGKD 240
  241 GAPGSPGQPG PRGGPGEPGQ DGAPGQPGLP GSDGTPGEKG ICPKYCAIDG GVFFEDGSRR 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	11	0.91
Transmembrane Helix	12	35	0.91
Non-Cytoplasmic	36	300	0.97