YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sfxn-1.5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELVKTLVL RPDISKPKWD QSTFEGRAKH FFAITNPLNL FHGEKQLDEF KKIVEDYRKG  60
   61 SVSNDLTLNQ LWKAKHVVDS AFHPSTGEKM MMVGRMSAQV PMNMAITGGM LTFYKSPMAV 120
  121 IFWQWLNQSF NAVVNYTNRS GDGGSVSQLL VSYCAATGGA LTAALGLNSL VKKAPPLVGR 180
  181 LVPFVAVCVA NSINIPMMRR GELTEGIDIL DENGQVIGQS PGVAQSAISQ VVVSRIFMAV 240
  241 PSFAFIPVVV NALEKRPYFK ANPKMFLPLQ TILCGLVLSV STPVGCALFP QLTPVSFDQI 300
  301 EPELAQKIKN LPNPPKQLYC NKGL

Type	Start	End	Confidence
Cytoplasmic	1	99	0.98
Transmembrane Helix	100	121	0.85
Non-Cytoplasmic	122	148	0.87
Transmembrane Helix	149	168	0.94
Cytoplasmic	169	176	0.80
Transmembrane Helix	177	197	0.89
Non-Cytoplasmic	198	230	0.91
Transmembrane Helix	231	253	0.86
Cytoplasmic	254	265	0.95
Transmembrane Helix	266	289	0.85
Non-Cytoplasmic	290	324	0.93