YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	vha-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGAILKTT ATLTVITTLI ILGTGLFYML SGQGHRFDIG WFLTSTSPHM WAGLGIGFSL  60
   61 SLSVLGAGWG IFTTGSSILG GGVKAPRIRT KNLVSIIFCE AVAIFGIIMA FVFVGKLAEF 120
  121 RREDLPDTED GMAILARNLA SGYMIFGGGL TVGLSNLVCG LAVGIVGSGA AIADAANPAL 180
  181 FVKILIIEIF ASAIGLFGMI IGIVQTNKAS FGNK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.89
Transmembrane Helix	10	31	0.92
Non-Cytoplasmic	32	50	0.89
Transmembrane Helix	51	73	0.93
Cytoplasmic	74	92	0.84
Transmembrane Helix	93	114	0.94
Non-Cytoplasmic	115	144	0.88
Transmembrane Helix	145	172	0.81
Cytoplasmic	173	179	0.81
Transmembrane Helix	180	203	0.89
Non-Cytoplasmic	204	214	0.83