YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	egl-43
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSQAALTKH RPVCEMTALY KPLMAQLAGL SGAGGLGSVP YWPHILQMAT QAPHFPLAFL  60
   61 AANPEAYKLM QQTTCASPDA ECSSGHASES SPTTTEPVDL TATPKPPSTS EMETTSKSDD 120
  121 GEDRDSIGDS GNDDDDDSEA GVLDESSTTT STKKRPTSHT ISDILAAPQL GAQALNSTFL 180
  181 GMLQRSLNYN PAVPSPHSFL RAMSGAKASS SPSSSSGSGK DRYTCKFCQK VFPRSANLTR 240
  241 HLRTHTGEQP YKCQYCERSF SISSNLQRHV RNIHNKPNTS LTPHNHHRQR SLHNSTSTST 300
  301 TTTTVHHPLL HLPGTSVPVP KV

Type	Start	End	Confidence
Cytoplasmic	1	19	0.53
Transmembrane Helix	20	42	0.50
Non-Cytoplasmic	43	322	0.93