YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE03547
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVIAFSCRK DSGQEPSQSR WRPYLKYIII VAVFLIVVAI ATVTIVLIAN RVDGSANTST  60
   61 VPNVSSTVAK STITTRAPPV CNKRIIGYYF ATQTSVITRD QVSKLTHAVF AFVNMTSDGH 120
  121 LQIDGDLAKN RFTNLIEIAK QQTPQVKVMI SIGGNDNSNN FKPGLSSPDR KKLFINSTVS 180
  181 FLQTYDIDGV DLYWKWPGKT SKDIYSQFIN DLRYSLQRQK RNYIMSIVLP PPDMGANYEA 240
  241 GIDIENIFDN VDFLNIFTMG YFGPWQNDAG MITGAASQLF NGVNGVPGRK TYNIHHSTER 300
  301 YVCKTGQSDK YNIAIPFYTM LWKHVKGPVN PPNIEIYRNA TFQGGVVGET SMSRKLVQEE 360
  361 GYDFSNPTYN PEIRAAFKYN ATTETFLTFE TNDTIAAKID YVKDRILGGV WIWAVDMDDD 420
  421 SNNLLNLVKF TGYCTVGNLT LYNC

Type	Start	End	Confidence
Cytoplasmic	1	26	0.95
Transmembrane Helix	27	49	0.94
Non-Cytoplasmic	50	444	0.98