YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE03544
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNYSLLDK FHSYYERRAH NNNELTTKLV KRVVIISGIF LFCGIVSYAL TTFVFHFYKE  60
   61 DKFSKNEVGL DPICKRRIVG YYSEYDSTDI SKNQLAKLTH AVFAFVDIKY DGTLQFKNLI 120
  121 TEQKFFSLKS KARSLHSNLK LMFSIGGDEN SFDFSSALAN TQMKSTLITS IIAFIHSHMI 180
  181 DGVDLHWKWP TSRDKSNYAT LIREIREKVD ELDAKIIISI TIPPVGVSDW ESGFDLDAIQ 240
  241 KHVDFINVHS MDYAKPLPNQ WGTPTGPSAS MNFNIGLRQH YNVDWTMKHY TCELKKPSMI 300
  301 NLVIPFYVRM WKNVQKAIDN RTEVFRNVEL KDNEVEGRSQ LSRYTVEHED MELSPESWDN 360
  361 ATQTPYVLDL KTRTFFTYEN EKSIKVKLDY VNKMDLGGVW IWSVDMDDRL NTLLSFVFPN 420
  421 ELCSSYSENG IKYSC

Type	Start	End	Confidence
Cytoplasmic	1	32	0.93
Transmembrane Helix	33	56	0.86
Non-Cytoplasmic	57	435	0.97