YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE03366
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.77
Transmembrane Helix	7	26	0.92
Non-Cytoplasmic	27	42	0.69
Transmembrane Helix	43	66	0.76
Cytoplasmic	67	73	0.50
Transmembrane Helix	74	106	0.69
Non-Cytoplasmic	107	122	0.83
Transmembrane Helix	123	142	0.93
Cytoplasmic	143	176	0.94
Transmembrane Helix	177	197	0.90
Non-Cytoplasmic	198	213	0.82
Transmembrane Helix	214	236	0.93
Cytoplasmic	237	246	0.87
Transmembrane Helix	247	268	0.90
Non-Cytoplasmic	269	274	0.91
Transmembrane Helix	275	296	0.93
Cytoplasmic	297	305	0.91
Transmembrane Helix	306	325	0.96
Non-Cytoplasmic	326	330	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKDTTLGIV CAVVSAITFG STYVPLKWFH KGDGLYFQWV QSLGQLLVGV AVAMTTAPAP  60
   61 IHPIAMLSGM FYSVGNSLTV FIMDGIGLAI GYLLWNTVTC VVGWAVTRFG LFANPQQYPK 120
  121 SDWLNILGVV TVCVGGAIYA PIKHIPARVR PAPWSLEEDN YKDDPLVVKE VSCTRRILCL 180
  181 FLTIFVGFLY GNFLTPINYI IANEPGSHQD VRAYILSYCL GSFVTSTVIF FVYSIVKKNV 240
  241 PLVNAELSMP SIISGILYGI AVTTFFMANQ HLDQVIAYPI LSKAPGIIVS LWAIFLFKEI 300
  301 QGKKDIIQLY IGIFVTLLGI AFISLSKVEF