YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE03314
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRETILMMAW AMIGTAFFVF FALKMGLTAG YGRYTNQAQW GINPKLAWFI QESPAFFIPF  60
   61 YFLFGGLSST GRILNCIFLV HYFYRALIYP FRIRSTTKSP LLIVAAAVAF CTYNGTLQGV 120
  121 WNSYYQLEEE LTYRHLIGSI LYFSGMFINH KSDNILMTLR KPGETGYKIP TGFLYEYISC 180
  181 PNYFGEIMEW IGYAILGWNL PALAFAIFTF ANIGPRAIAH HNWYKEKFPK YPPTRRALIP 240
  241 YIY

Type	Start	End	Confidence
Cytoplasmic	1	7	0.89
Transmembrane Helix	8	30	0.88
Non-Cytoplasmic	31	57	0.91
Transmembrane Helix	58	82	0.86
Cytoplasmic	83	98	0.85
Transmembrane Helix	99	117	0.92
Non-Cytoplasmic	118	190	0.65
Transmembrane Helix	191	214	0.83
Cytoplasmic	215	243	0.73