YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE03285
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHTPRKLCS LFQNFQLGTR EIFFVKTTED RFHSIFLSAY KPNKFISSIF VCCNSFLLLN  60
   61 FVESFLFYKK EIRLFFLNNL STKNHQPNFL LVCRRFSLRT DVFFIVVKLE FTVYGFLRSP 120
  121 FPLSASISIF NQYYLQIQKS MFLQSATLVI ITLLPLFSGL EVRRRRSVAP FLGSGGSQPT 180
  181 GMLISPELWH CGSEGSTRNY TYQATVRDCP SLAAALNHCC AIHDDCYGQQ KGQEKCDEDF 240
  241 CECNRMVTRL PTEEGYKCRA AADDACLILA VLGWSAYGDS NYTDPTKPSA NVLVTPETVP 300
  301 KMESDFMNLY SKCPYANITL ASCANNFDLC AVVHSVDFCA NDLCHCMLDA AESDDIHKKE 360
  361 CSPAVAHTCR AVLRHSSDVL ASRSVTRNFI IIALLVLAAA SVGFGLFFMY TRVAGERKKV 420
  421 EEGKYLQIHT VESARSVNPL LLSAD

Type	Start	End	Confidence
Cytoplasmic	1	44	0.58
Transmembrane Helix	45	67	0.55
Non-Cytoplasmic	68	113	0.44
Transmembrane Helix	114	134	0.33
Cytoplasmic	135	139	0.23
Transmembrane Helix	140	160	0.73
Non-Cytoplasmic	161	388	0.56
Transmembrane Helix	389	410	0.93
Cytoplasmic	411	445	0.60