YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	aat-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.98
Transmembrane Helix	32	53	0.93
Non-Cytoplasmic	54	63	0.77
Transmembrane Helix	64	86	0.90
Cytoplasmic	87	118	0.89
Transmembrane Helix	119	139	0.88
Non-Cytoplasmic	140	150	0.87
Transmembrane Helix	151	172	0.89
Cytoplasmic	173	181	0.77
Transmembrane Helix	182	204	0.91
Non-Cytoplasmic	205	225	0.92
Transmembrane Helix	226	247	0.89
Cytoplasmic	248	256	0.94
Transmembrane Helix	257	280	0.88
Non-Cytoplasmic	281	306	0.91
Transmembrane Helix	307	334	0.85
Cytoplasmic	335	354	0.95
Transmembrane Helix	355	373	0.96
Non-Cytoplasmic	374	383	0.76
Transmembrane Helix	384	402	0.96
Cytoplasmic	403	414	0.88
Transmembrane Helix	415	437	0.91
Non-Cytoplasmic	438	442	0.84
Transmembrane Helix	443	462	0.94
Cytoplasmic	463	493	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAEKEPLKS REGDEAPQNE TEGKGKGLEK SLTLFNGVSM IVGCIIGSGI FVSPTGVQEQ  60
   61 AGSVGLSLIV WLISGIFTAI GAYCYAELGT LIKKSGGDYA YIMEAFGPFV AFIRLWIEAI 120
  121 VVRPCTVTIV ALTFAIYGLR PFFPDCAPPD VVAELLAILL IVLMTAINCI SVRLATIVQD 180
  181 WFTIAKVVAL CLIILTGLGL LFFGESQYKD SFENIFENTS QDFTKVSLAF YSGLFAYSGW 240
  241 NFLNFIVEEL QNPKRNLPLA IAISITSCTV IYVLTNVALY TAISPDEMLE SPAVAVLFAN 300
  301 KLYGKFAFIM PLCVACSTIG SANGVIFTSA RLFYSGAREG QMPAVLTMIN KKTKTPIPAV 360
  361 ILTGALSIAY LLASKDVYQL INYIQISYWL AIGTAIAALF WLRRTMPDAS RPIKVPLIWP 420
  421 AIFLAGCIAL VLIPMVAAPR DTGIGLLIML SAVPVYGIFI GWKNKPKWFN EFIDSSTVFI 480
  481 QKLFMVVDED KED