YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE03235
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREILLTMAW AMIGMAVIVF LALTRGFTAG YGRYADRSKY GINPKLAWFI QEAPAFFIPL  60
   61 YYLRRGPSNS GYELNAAFLF HYFFRALIYP CRIRSTTKSP VAIVAAATFF CAYNGFLQGY 120
  121 WNAFYQPEEP WTTRKLVGSL MYCTGMYINH KSDTILRELR ADGGTGYKIP TGFLYEYISC 180
  181 PNYAGEIMEW IGYSILAWNL PALAFAIFTI ANIGPRAVAH HKWYKETFPG YPPNRRILIP 240
  241 RIF

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.48
Transmembrane Helix	7	29	0.88
Cytoplasmic	30	45	0.47
Transmembrane Helix	46	63	0.50
Non-Cytoplasmic	64	70	0.60
Transmembrane Helix	71	89	0.67
Cytoplasmic	90	99	0.80
Transmembrane Helix	100	121	0.87
Non-Cytoplasmic	122	194	0.93
Transmembrane Helix	195	214	0.92
Cytoplasmic	215	243	0.92