YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	prx-12
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTIRASQL ASSISPKTEE KQPSVFDIIA QENLATSIRP ALQHLVKYLA FFKPKTFLSV  60
   61 HRNFDEYYII FDLILQNHYL RNYGASFTEN FYSMKRIASG TGNPPNDGRE RIMSLITLVG 120
  121 WPYVENKLNQ LYDRLKEVYE CRSWSSINGM KAKCQKMFVI IWPYIKTALK AVKSALQLAY 180
  181 ILNRSSIHSP WLYFSGVILK HLTPEDLEAF NAVPLHLQTG YQISRGTLNE HIHLRFFNRI 240
  241 WRFILGLPGI VSRLFAYGLF FVQFLDYMYN TDLAKLTKTG LDGAIPSPPH KMIISESEIL 300
  301 SLDTNKCPIC LKKRVNDTAL FVSGYVFCYT CINQYVNTYN KCPVTGCPAN VQHLIRLFV

Type	Start	End	Confidence
Cytoplasmic	1	239	0.60
Transmembrane Helix	240	261	0.66
Non-Cytoplasmic	262	359	0.85