YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE03130
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKITKNVVL IRTLEAKILL VRTFSFTRLL LLDVAFSIYL WNIWTPNWEW TVNEFWDQTG  60
   61 NVADNLNGTI TWLRSNPAGL KLNTPVNETL AWFFTYHIYL WTTFIGFLRS DAFFRFIAYS 120
  121 LIGGISTFSA MVYDFSQIFF LHFNCFDAYA TKLCYLCYYT LTVLWSLVRG KKWNPLRERK 180
  181 DTVILDTRQQ FLATSLFVIL LFILPTIFVY FVVFRCLRLA VSALQTVLYF FATWPFQLFA 240
  241 LEKHLAEKYG KPADAQNEAL AEKKTKSQN

Type	Start	End	Confidence
Cytoplasmic	1	19	0.96
Transmembrane Helix	20	41	0.89
Non-Cytoplasmic	42	88	0.94
Transmembrane Helix	89	108	0.89
Cytoplasmic	109	115	0.76
Transmembrane Helix	116	136	0.89
Non-Cytoplasmic	137	147	0.82
Transmembrane Helix	148	169	0.88
Cytoplasmic	170	190	0.88
Transmembrane Helix	191	212	0.94
Non-Cytoplasmic	213	218	0.73
Transmembrane Helix	219	241	0.78
Cytoplasmic	242	269	0.89