YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE03109
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKIGPYSI ALVSDFFCPN AGGVETHIYF LAQCLIELGH RVVVITHGYG NRKGIRYLSN  60
   61 GLKVYYLPFI VAYNGATLGS IVGSMPWLRK VLLRENVQII HGHSTFSSLA HETLMIGGLM 120
  121 GLRTVFTDHS LFGFADASAI LTNKLVLQYS LINVDQTICV SYTSKENTVL RGKLDPNKVS 180
  181 TIPNAIETSL FTPDRNQFFN NPTTIVFLGR LVYRKGADLL CEIVPKVCAR HKSVRFIIGG 240
  241 DGPKRIELEE MLERFKLHER VVILGMLPHN QVKRVLNQGQ IFINTSLTEA FCMSIVEAAS 300
  301 CGLHVVSTRV GGVPEVLPIG EFISLEEPVP DDLVDALLKA VDRREKGLLM DPTEKHEAVS 360
  361 KMYNWPDVAA RTQVIYQKAV ESEPTGRLGR LKGYYDQGIG FGIMYIVVSC IIIFWLTVLD 420
  421 LFDSPRKNGT NDKTSEKNVD PDYQ

Type	Start	End	Confidence
Cytoplasmic	1	63	0.58
Transmembrane Helix	64	87	0.74
Non-Cytoplasmic	88	107	0.60
Transmembrane Helix	108	126	0.47
Cytoplasmic	127	396	0.70
Transmembrane Helix	397	419	0.88
Non-Cytoplasmic	420	444	0.70