YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE03092
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.26
Topology Confidence:	0.26
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.26
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	30	0.50
Transmembrane Helix	31	54	0.82
Cytoplasmic	55	63	0.53
Transmembrane Helix	64	83	0.57
Non-Cytoplasmic	84	85	0.52
Transmembrane Helix	86	110	0.78
Cytoplasmic	111	119	0.75
Transmembrane Helix	120	138	0.94
Non-Cytoplasmic	139	157	0.88
Transmembrane Helix	158	181	0.90
Cytoplasmic	182	197	0.93
Transmembrane Helix	198	218	0.90
Non-Cytoplasmic	219	229	0.73
Transmembrane Helix	230	254	0.75
Cytoplasmic	255	256	0.58
Transmembrane Helix	257	288	0.66
Non-Cytoplasmic	289	294	0.77
Transmembrane Helix	295	316	0.91
Cytoplasmic	317	318	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAVISTTL FGCVGCQAGI EYLQTYVKNS LNLITFASFI FTATYGLIFH SKFFTVPNRI  60
   61 PIKSYAKIVA IFFTVNMTNN LALKFAIYFP LFIIFKSGTL LTNMTMGWII RNYQYSLKQI 120
  121 SAVVVVTAGI VIFTLASYEP GAQNIRSGID SNSWLIPIPP FVVGLALLSF ALILSAYLGL 180
  181 YQETFYQKHG KHNEEMMFYV HFLSIPLFAF VGDDMVPAFH AAYSTPSFVI AGLDTVVPSA 240
  241 WVYIFAICLF QFACTKGVYM LSAVTTSLNV TMVLTLRKFF SLLISFIVFE NVFNMFHIIG 300
  301 AAFVFIGTIL FSVSFARF