YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-119
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIDSKIKAY RFVGYAALTF STVAVLSVCI TLPMVYNYIH HARKTMHHDI VECRAEAKKL  60
   61 WGDVNRVPDM VMAHNRTARQ VGNGQCEGCC LPGAQGPPGT PGRAGRPGKP GAPGLNGNPG 120
  121 RPPKEPCEPI TPPPCKPCPE GPPGPAGPPG PQGNKGPLGP PGPPGPEGPN GTAGNKGPAG 180
  181 PPGPGGKPGP AGPPGENGRN GEPQPGSPGE PGRPGQPGSR GPAGQPGKDG AQGGPGEKGA 240
  241 NGEPGQPGRD GQPGRPGQPG RDGHPGEKGV CPKYCALDGG VFFEDGSRR

Type	Start	End	Confidence
Cytoplasmic	1	11	0.61
Transmembrane Helix	12	36	0.82
Non-Cytoplasmic	37	289	0.70