YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sru-35
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGSIHGLQE YKNFHYYFTF STVIAAIPLS YMPPTIFVMF KIVLTYWKSK NVSMDRHIFT  60
   61 FISINFFCSL SFFFSDYFRI TLPATGIFTS WCASVRPNHF FKLIFISTYI FNYCILMLPF 120
  121 YISLIRVVIL LRPRDYDIIC PKLMFILIPL LIIIPLGCTA FLIPAVGYCR ILNYPLKFGA 180
  181 IAIYYSGGWP GWRNSYIHLM MSIIMCFLTL LCTALMFFKL RATSLNSNIS MKTKKSSSKA 240
  241 ERSLTITIIA AMIPFSNNTA WAIVYLSFPK YGDYFTFTRP IGNDIETCVT PWILYLTHPM 300
  301 FMSEKKNANS TSTISVINAQ TQI

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.91
Transmembrane Helix	17	40	0.85
Cytoplasmic	41	57	0.79
Transmembrane Helix	58	78	0.92
Non-Cytoplasmic	79	104	0.85
Transmembrane Helix	105	130	0.81
Cytoplasmic	131	142	0.90
Transmembrane Helix	143	166	0.90
Non-Cytoplasmic	167	195	0.92
Transmembrane Helix	196	218	0.93
Cytoplasmic	219	242	0.89
Transmembrane Helix	243	265	0.86
Non-Cytoplasmic	266	323	0.71