YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE02996
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPVPSNSTN APLLENQQIT RRISCLIQWK HLIKPCLILI AILVFSAPVA YSLSELIMVA  60
   61 RHKSETVSNL IKIFIPSSKK LSTTTKTNSP PKHLIQESHQ TISPPAAFCG KRIVGYFAEF 120
  121 ENAGLSRKQL HMLTHIIYLF ARPTNGVITL DGEQTRRKFE EMKSKAREAS STLKVMISVG 180
  181 GHDYYKEYSR LVSNETSRNV FVKSIVSFFK KNDIDGIEIF WTRPKYEDIK SYSSFIQELR 240
  241 SAFTELQKRW NRKNEYIISL IVPKEKHWSF DLKDFSKFVD FFNIYSTQFR EKQVGPDSPL 300
  301 YGGEGRNIDE TMKYYICKTG QPSKFNIMVS FHGTFWEGAE LPLRDYSDDI WKEKNVARGP 360
  361 FAVRWRHLRQ RNWNLTDIKF HNLTKTSYIW IPGPPTWFLT LEDEKSLREK NRYVADHNIG 420
  421 GITMWTIDQD DDDHTLLKVV SSAELCTGDE KNTIKYTCE

Type	Start	End	Confidence
Cytoplasmic	1	30	0.89
Transmembrane Helix	31	51	0.83
Non-Cytoplasmic	52	459	0.98