YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE02995
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPADLNSTS VPLLRNQNIT QKNNRQWKNF IKHCYILITI LVLSAPIAFS LSKLIMVARH  60
   61 KSPTVSNLIR VFIPSSKKLK TTTEKNLPTT KQLFKYSTET IFPPAALCGK RIVGYFAEFE 120
  121 NTALTRKQLQ MLTHIIYLFA IPKNGNMTFG GERSRRKFEE MKNEARKANS TLKVMISIGG 180
  181 QSNSRSFSRL VSNETSRNVF VNSIVSFVQK YDIDGIEIFW TWPKYEDANN YLIFIQELRY 240
  241 AFIELQKKLN RKEDYVISII VNCYDNQLSN LMGFSKFVDF FNIYSIHYQS RQVGPSSPLY 300
  301 GGGSRNIDET MKYYICRTGQ PSKFNMMVLF HGTFWKGAEL PLRNDSDDIF KDQNSAKGGF 360
  361 AVRWRELLQQ KWDMSNIKFH NLTKTSYMWI PGSSLFLTLE DEQSLRVKNR YVADHNIGGI 420
  421 TMWTIDQDDG DHTLLKVVSS AELCTGDEKN TIKFKCE

Type	Start	End	Confidence
Cytoplasmic	1	33	0.88
Transmembrane Helix	34	56	0.83
Non-Cytoplasmic	57	457	0.97