YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE02993
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLNTTYNP LLKYHKLSLK TRALTQGENI VKPCVILVAI ILISTPFVFV FSKLIILACC  60
   61 KCQTVSTSIN ALMLNNSTTS QHALKSNETI SPPAALCGKR IVGYFAEFEN SGLTRRHLQM 120
  121 VTHIIYLFAR PTNGVMTLDG ERTRRKFQEM RSKAREVSST VKVMISVGGH DHSGAFSAIM 180
  181 SNEASRSVFI KSIVSFVKNE DIDGIEIFWM WPKHRDVNNY SIFIQDLRNE FTELQKRTNR 240
  241 KNEYIISLLV PKKSYWSFDF EDFLKFVDFF NIYSTQFREK QVGPDSPLYG GEGRNIDETM 300
  301 KYYTCKTGQP SKFNIFVSFH GTFWKDAELP LRNDFDDIFK DKNLTKGAFA VRWRELLQQK 360
  361 WNLEDIKFHN LTKTSYIWIP GPPTWFMTLE DKRSLREKTK YVADYNIGGI TMWTIDQDDD 420
  421 DHTLLKVVSS AELCTGKEKN EINYKCD

Type	Start	End	Confidence
Cytoplasmic	1	29	0.70
Transmembrane Helix	30	50	0.66
Non-Cytoplasmic	51	447	0.95