YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE02990
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVLNSTSPL LQNRNITPKT SCLTQWKHLV KPCFILIAIL VFSAPVAYSL SELIMIARHK  60
   61 SPTVSNLIKI VILSSKKSRT MIKTKSSTAT KYVGLPPLLD APNSNEALSP PAALCGKRIV 120
  121 GYFAEFENSG LTRKQLQMLT HIIYLFAIPR NGVITIVDDR SLRKFEEMKS NAREASSTLK 180
  181 IMISIGGHYN SRSFSGLVFN ETSRTVFVNS IVSFVEKYDI DGIEMFWMWP RYRDKNNYLM 240
  241 FIQELRYAFT ELQNKLNRKE DFVISLVASS NLNLLFNLVE FLNSVDFFGI YLFNSYSYQV 300
  301 GPDSPLYGGG SRNVDEIMKY YICKTGQPSK FNIIISFHAT YWEGTDLPLR DDSDNIWKVN 360
  361 ESGRLAVALR WRELPHHKWN LENIKFHNLT KTSYIWIPGP PTRFLTLEDE QSLREKNRYV 420
  421 ADHNIGGITM WTIDQDDDDH TLLKVVSSAE LCTGEEKNTI KYNCH

Type	Start	End	Confidence
Cytoplasmic	1	32	0.51
Transmembrane Helix	33	50	0.54
Non-Cytoplasmic	51	465	0.96