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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: lat-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRNKTTYSL LQTILVACLL TVTPTFASNK PTTDESGTIS HTICDGEAAE LSCPAGKVIS  60
   61 IVLGNYGRFS VAVCLPDNDI VPSNINCQNH KTKSILEKKC NGDSMCYFTV DKKTFTEDPC 120
  121 PNTPKYLEVK YNCVVPATTT TTTTTTSTTT TDSSLIVDEE EEAQKDALNS DVIKPVKKKE 180
  181 DVFCSATNRR GVNWQNTKSG TTSSAPCPEG SSGKQLWACT EEGQWLTEFP NSAGCESNWI 240
  241 SSRNSVLSGV ISSEDVSGLP EFLRNLGSET RRPMVGGDLP KVLHLLEKTV NVIAEESWAY 300
  301 QHLPLSNKGA VEVMNYMLRN QEIWGSWDVT KRKEFASRFI LAAEKAMVAS AKGMMTSAES 360
  361 NVIVQPAITV EISHKIKMSS QPTDYILFPS AALWNGQNVD NVNIPRDAIL KINKDETQVF 420
  421 FSSFDNLGAQ MTPSDVTVAI AGTDQTEVRK RRVVSRIVGA SLIENGKERR VENLTQPVRI 480
  481 TFYHKESSVR HLSNPTCVWW NHHELKWKPS GCKLSYHNKT MTSCDCTHLT HFAVLMDVRG 540
  541 HDLNEIDQTL LTLLTYVGCI ISIICLLLTF FAYLIFSRNG GDRVFIHENL CLSLAIAEIT 600
  601 FLAGITRTED SLQCGIIAVA LMYMFLSALT WMLLEGYHIH RMLTEVFPSD PRRFTYLLVG 660
  661 YIPPAIITLV AYLYNSDGFG TPDHCWLSTQ NNFIWFFAGP ACFIFCANSL VLVKTLCTVY 720
  721 QHTSGGYLPC RHDVDSGRSI RNWVKGSLAL ASLLGVTWIF GLFWVEDSRS IVMAYVFTIS 780
  781 NSLQGLFIFL FHVVFAEKMR KDVGHWMYRR GCGGSSNSSP NHKRHNVQRD LMSPGVNSST 840
  841 GSDFLYNTND KYLTNSDTTN RLVYNGIMNH PNQMSVYQQH PHHQIYEQQP GTYDYATIAY 900
  901 GDMMPGHRVA APPAYQRLAV AEGRYGSQHQ LYQGWHHRPP PEFSPPPPPL STGPPNSRHY 960
  961 GTGSSGRRPP SSKMSDDSAY SDGSSSMLTT EVTPQGQTVL RIDLNKPSMY CQDL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle