YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE02848
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRYEFYELK SWMYLPVIFI GLLGNFASFL VYRTAPMRKS TVGTLLLILS LIDILLLILI  60
   61 TPIFVLVFLP LWQDQWQKYS FHMSFFAYST RYVYPLCMMT KSCSLYLMVL ITIERWIAVC 120
  121 RPLQAKVLCT NRNTMKAGIF IIIFSIVFNF PRFFDYKIGD GYLSEMWMLD TEKHWWYFMF 180
  181 YFIILSVIFD YFLPFLIMTI ANYHVIRALQ ESDEVITGLA VQKRKDQKTT VMLLVVTIFF 240
  241 AFCHLFSMFL KVAESIFGGF LTQTSFYWEV FAEFTIFLII FHTSSTFFIY YGFSEKFRTI 300
  301 FHDIIRCRQR LDDVKCSTYL PVNSSGAVSE SKTRKAPAIV

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.96
Transmembrane Helix	12	32	0.93
Cytoplasmic	33	44	0.78
Transmembrane Helix	45	69	0.88
Non-Cytoplasmic	70	91	0.90
Transmembrane Helix	92	113	0.91
Cytoplasmic	114	133	0.89
Transmembrane Helix	134	154	0.92
Non-Cytoplasmic	155	174	0.96
Transmembrane Helix	175	198	0.89
Cytoplasmic	199	229	0.94
Transmembrane Helix	230	250	0.94
Non-Cytoplasmic	251	269	0.89
Transmembrane Helix	270	293	0.89
Cytoplasmic	294	340	0.99