YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE02750
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.86
Transmembrane Helix	8	26	0.92
Non-Cytoplasmic	27	58	0.93
Transmembrane Helix	59	81	0.91
Cytoplasmic	82	88	0.91
Transmembrane Helix	89	111	0.93
Non-Cytoplasmic	112	117	0.86
Transmembrane Helix	118	139	0.93
Cytoplasmic	140	149	0.90
Transmembrane Helix	150	171	0.91
Non-Cytoplasmic	172	178	0.78
Transmembrane Helix	179	200	0.95
Cytoplasmic	201	266	0.98
Transmembrane Helix	267	286	0.95
Non-Cytoplasmic	287	304	0.86
Transmembrane Helix	305	324	0.95
Cytoplasmic	325	330	0.94
Transmembrane Helix	331	353	0.91
Non-Cytoplasmic	354	358	0.74
Transmembrane Helix	359	386	0.82
Cytoplasmic	387	400	0.81
Transmembrane Helix	401	419	0.93
Non-Cytoplasmic	420	427	0.69
Transmembrane Helix	428	449	0.94
Cytoplasmic	450	488	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKLNWKLLI LSAVLAITAI FQMGYTNAYP NTAIGSFRIF LNESANEPYT LSNSEFEWAW  60
   61 SAMLAIYFIG FAAGSVISAG VADRIGRKWT LFLGTCGSLL SSLIALFAII LKMPLMFGFS 120
  121 RLVMSLSAAI SMNGLILLFQ ESSPSHMRGL ISFNAEMAFV ITNLIGGLFG MQSILGQNIV 180
  181 GLIAVSIIPS SVACFLTVFL KESPKYLFLK KHDATEAGRA LQFYQNIKDE EEKMNVLNDL 240
  241 KLEKEEMGHQ KNGSLFDIMA NQPVRRGFLL GLATMQLTAS VWPVVFYSTD FLMDAGFSYE 300
  301 LSESVSTGML FLSSLSTIVG MFIVEKYSRK WLLIGTASVN IAAILVFSLS AILSHYWTWI 360
  361 GYGCIICLIL HGISYSVAMG PIAWFITSEL VPINFRAASQ SLVLALNHTV ALVLAFLTFP 420
  421 LYKTIGPITL VIFFVIPGIL CIIMLILYLP ETKDKHINVI VEQLRETKAK RKESQKLETE 480
  481 ESIGMNKL