YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	scpl-2
Protein type:	Transmembrane
Type Confidence:	0.53
Topology Confidence:	0.08
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTIAQSVFC FLAGFFNFFL LYFRKTSRAY CKYQVVKYHS NIPMSPLTTH RLLTVKRKIL  60
   61 VLDLDETLIH SHHDGVLRQT VKPGTPSDFT IRVVIDRHPV KFSVHERPHV DYFLSVVSQW 120
  121 YELVVFTASM EVYGTSVADR LDRGRGILKR RYFRQHCTME VGGYTKDLSA IHPDLSSICI 180
  181 LDNSPGAYRK FPHNAIPIPS WFSDPNDTCL LNLLPFLDAL RFTSDVRSVL SRNMQALPET 240
  241 QSVQYY

Type	Start	End	Confidence
Cytoplasmic	1	3	0.08
Transmembrane Helix	4	23	0.49
Non-Cytoplasmic	24	246	0.55