YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-29
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLNPACAS EDVKNALTSP IMMLSHGFIL MIIVVSFITT ALAVQTLWYK NVFPFCTKNL  60
   61 LLSAIVNGIF HQSTVAEIRL KTVYHLIRYS NAPCSILFQS SDCFYDNFLY YQTALFSSFY 120
  121 CVSLFLDRLF SLNPRSFYNS HQTLGFIVFL ILQIICPIAI QFWTFHDSDY TSYVPMCNYP 180
  181 PASSVSGTKF YFINDSRIII MGTIFMCSLF LYIHNKSREK RMIFNVYNTD SRYKSYENFL 240
  241 ATRAVCIIIF SQITCLGITS FVPSIFNQFR QSISPDWFHL ILAFMAGATY SNFFLPLIVI 300
  301 YETQLIIAHR HKLIKKLKSQ KEEFSDHFAS LDFVWEREAN KKKTQLVQ

Type	Start	End	Confidence
Cytoplasmic	1	23	0.79
Transmembrane Helix	24	45	0.90
Non-Cytoplasmic	46	107	0.83
Transmembrane Helix	108	130	0.84
Cytoplasmic	131	142	0.88
Transmembrane Helix	143	165	0.91
Non-Cytoplasmic	166	195	0.93
Transmembrane Helix	196	214	0.94
Cytoplasmic	215	238	0.97
Transmembrane Helix	239	262	0.87
Non-Cytoplasmic	263	279	0.83
Transmembrane Helix	280	301	0.92
Cytoplasmic	302	348	0.96