YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mps-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHKNISPTCQ EGIREACITL KNACDPQVLD KAAIRMREYE NEFGRILYTI SILIMFSFVI  60
   61 ILLMVRSIRR TQSTVEMDSL LDAMRIREEL EIQERKRRRL MRAKTQVTAW LVNKNKEKGP 120
  121 EKRKDSEWKP LPNGTRPRGH YSISTVTSDI PEIVVSADDC IHSDFPNRPH TPAISMIYDF 180
  181 GIASPDLIEP DSRKPSISSS TAIPMSSSSS SSMNSLIEPN MNSIKSNPRT YSLDTNASTS 240
  241 SRTPRVDCDD KSFSLDVHVD CAGLVSVVRW LLIRRFDVTV FLPVVYNNVN NYNSKNAELL 300
  301 AVR

Type	Start	End	Confidence
Cytoplasmic	1	43	0.95
Transmembrane Helix	44	65	0.94
Non-Cytoplasmic	66	303	0.96