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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7496493
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.57
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAACLCVCVC VCACVCRKFL FLSDKLCLIA AQFFLFVFNA SFLPSSVFRL LEALKPVVYF  60
   61 YFQSQKLVDQ FNFFNFQRPA SKENRSEWEE RLTEEGSMSH ESSEKAHKAI ENVEDYCQTL 120
  121 TRHGNEELRT NLERVITTFK SNLMHSLLDI HDLYEQTLLS ERKSDAEKNM EVRRVIERLE 180
  181 GGPHSYNSRP AATTSTSNYN LSSTTPLISD LRDRGGFSYL NGGGLGNGLG NGLGNGLLSS 240
  241 PYNSSSTHYL HERQRQTSHD GTWRETTTRT VDTPSGLERR VVEHTGVIDD HGRKWELENI 300
  301 VLEKGHTGLG FSITGGMDQP TEDGDTSIYV TNIIEGGAAL ADGRMRKNDI ITAVNNTNCE 360
  361 NVKHEVAVNA LKSSGNVVSL SLKRRKDEAF LPIGGNFGGS TSYLRSGVTP SVSAGNLQHA 420
  421 IHSPSAPIHP PPPPPVHHGS LSQLSVGQYR STRPNTSVID LVKGARGLGF SIAGGQGNEH 480
  481 VKGDTDIYVT KIIEEGAAEL DGRLRVGDKI LEVDHHSLIN TTHENAVNVL KNTGNRVRLL 540
  541 IQQGTGAIFN DSASQQFMPT TPILRPSSVQ DYNRSQMGSQ SHLSYGGPLN TSYSSQAPIA 600
  601 IPLEPRPVQL VKGQNGLGFN IVGGEDNEPI YISFVLPGGV ADLSGNVKTG DVLLEVNGVV 660
  661 LRNATHKEAA EALRNAGNPV YLTLQYRPQE YQIFESKIEK LRNDVIAQSR MGTLSRKSEY 720
  721 VRALFDYDPS RENSVAPHRS MGFNYGDILH IINSSDDEWW TARKVHENGE ETAEGVIPSK 780
  781 KRVEKRERLR RKQVNFNSGS QSLGRNSSTT GLENRRGSRS QLSFSRKFPF VKSTDRLNDL 840
  841 NEESSNVAEE PVWSYQAVEQ QAINYVRPVI ILGALKDRIN DELVNRDPSK FSSCVPHTSR 900
  901 PPREGEVNGR DYYFVNKHNM EEDVKNNLFI EAGQFQNNLY GTSIQSVRDV ANQGRHCILD 960
  961 VSGNAIRRLQ SNANIQPISI FIKPSSAQQI LELDSQLATN RQDDRAMSGE EAQAQYSRCH1020
 1021 RIEQTFGDLF TQEISNTPIW VPQTLLLELR NLSFLLPSPS SPNSIHFLLE IVTVCDILNA1080
 1081 SFVSTNRKSL SYSRLSTDEK LRLISIFWDF YYSESILFSS IGSKLFFFNY F

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle