YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7496042
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVTMEDRSV KADKADRDDN NTTSTELLGK MRQTKVIDNC SHGTHTLEHD LRLKGEPIGK  60
   61 SESVKGVSRS LIIQIGMTVI FCALEFITGV VCSSIAMLAD SYHMAADVMA LIVAFTCIKS 120
  121 LPILCKSQRN IAFCLVATIM QNYKPIIRQI ATRPSTRLGY GWVRAETLGG FFNGIFMCTV 180
  181 CVLVFQEAVG RIINVHMITH PLQVLVIGFI GLLINLFGMF NLSGHGHSHG GGSHGHSHGG 240
  241 SHGHSHNNKK TKKNDGHGHS HANGHGHSHD GKSDCNGEEE PDHTRLNGKF RSASAMANSD 300
  301 ANVRLLDNDD NSNDIIERRL SGVNSQNTII ATVDRQMTPY GTHMASEVLN VSSNNLDKSA 360
  361 QKTEQKKDKN VNIHGVWLHL LSDAFGSVIV MISAGFVYFL PTWKIAAYLD PILSISLASI 420
  421 MGFTAVVLVK TSGEKLLKQT PEGLDLEKVK KDLCSIVGVS KVEKLSVWTL CGQRIIAAAH 480
  481 VNICHPAVFP EAAYKIKNYF HDLGVHSTTI EPTFEDTCMQ SMRIMVKKVV DGKSIEEPVS 540
  541 VSTENEITE

Type	Start	End	Confidence
Cytoplasmic	1	74	0.96
Transmembrane Helix	75	97	0.88
Non-Cytoplasmic	98	102	0.79
Transmembrane Helix	103	123	0.89
Cytoplasmic	124	166	0.93
Transmembrane Helix	167	189	0.87
Non-Cytoplasmic	190	198	0.83
Transmembrane Helix	199	220	0.88
Cytoplasmic	221	375	0.97
Transmembrane Helix	376	399	0.90
Non-Cytoplasmic	400	406	0.81
Transmembrane Helix	407	429	0.90
Cytoplasmic	430	549	0.98