YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE02435
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.99
Transmembrane Helix	46	67	0.93
Non-Cytoplasmic	68	81	0.91
Transmembrane Helix	82	103	0.92
Cytoplasmic	104	110	0.81
Transmembrane Helix	111	131	0.91
Non-Cytoplasmic	132	140	0.82
Transmembrane Helix	141	161	0.85
Cytoplasmic	162	176	0.76
Transmembrane Helix	177	200	0.88
Non-Cytoplasmic	201	206	0.89
Transmembrane Helix	207	229	0.93
Cytoplasmic	230	261	0.97
Transmembrane Helix	262	284	0.93
Non-Cytoplasmic	285	294	0.87
Transmembrane Helix	295	319	0.88
Cytoplasmic	320	327	0.94
Transmembrane Helix	328	348	0.92
Non-Cytoplasmic	349	353	0.81
Transmembrane Helix	354	375	0.93
Cytoplasmic	376	387	0.82
Transmembrane Helix	388	408	0.88
Non-Cytoplasmic	409	443	0.93
Transmembrane Helix	444	466	0.90
Cytoplasmic	467	507	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGADDGAISA DKVDIRLQPL NKNGAQDETD EEAADQIQLR VYKQRWIVLL AVALLNNTNT  60
   61 MSWIGYAPSG NYVNSFYGES SAAWLSMVYM MCTIPVGMFA MWAGREWGLR TAVLIAGWAN 120
  121 GIGAVIRVIS SLDFVPQDLR FPICMTGQGI AAIAYPFIMF LPTKVAGSWF PDTQRAIATS 180
  181 IGVMSNPLGV LMANLISPAI VKSPEHVIWL NIFTCVPSLI AMLIATFGVN RSEPKIPPTF 240
  241 SASKPQMDFV SGMKSCFSSK QYIILLIVMG GGIGMFNCLY TVMLELLCPS GYSNFFSGVC 300
  301 AALMIVGGVF GAAASSIFVD RTKLYEETLK IALGAAVIFG LIFLQLTLHQ GYSVILGVTC 360
  361 LLFGVLGLAT YPIGLELASE CTFPVSEATS TGLIVLSGQI QSVIYVFIMK NFARPLQPDR 420
  421 MHIQVCQLTP DDTINTPKDN TMSIMIFSLL ATLLVLTLVV LFKPVYKRLE AERGNRATAD 480
  481 KAKELSNQNK DRITLQAESA VEPLQKK