YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	clpp-1
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASVQSRVG IPFVIDNEGK GERTYDIYSR LLRDRIVCLM TPVDDFIASA LIAQLLFLQS  60
   61 ESGKKPIHMY INSPGGSVTA GLAIYDTIQM ISAPVSTWVI GQASSMGSLL LCAGEKGMRS 120
  121 ALPNSRIMVH QPSGGAQGTC SDIVIRAEEI TRLKRRLNEI YVHHTGMSYD EIEKTLDRDR 180
  181 FMSAHEALKF GLVDQIETHN GSMPSD

Type	Start	End	Confidence
Cytoplasmic	1	36	0.64
Transmembrane Helix	37	57	0.33
Non-Cytoplasmic	58	97	0.59
Transmembrane Helix	98	114	0.52
Cytoplasmic	115	206	0.58