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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: unc-49
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARPFTLIVL LSAHLCLHVV VTQDEDSHIN TQLLSSVLDR LTNRTTYDKR LRPRYGEKPV  60
   61 DVGITIHVSS ISAVSEVDMD FTLDFYMRQT WQDPRLAFGS LDLGLSKEID SLTVGVDYLD 120
  121 RLWKPDTFFP NEKKSFFHLA TTHNSFLRIE GDGTVYTSQR LTVTATCPMD LKLFPMDSQH 180
  181 CKLEIESCKS LCSPDIFSPN GYSILDIMYV SHEKKSVSTE SYELPQFVLQ SIKVVNHTQK 240
  241 LSSGEYSRLC WFFLFKRNIG FYIIQIYLPS VLIVVISWVS FWLSRDATPA RVALGVTTVL 300
  301 TMTTLMTMTN SSMPKVSYVK SIDIFLGVCF MMVFCSLLEY AAVGYISKRM KLVRARKESR 360
  361 MLTPLPHLES LPPKRTLSVP SYFNNTTYRP FYSSTDQTSN LYIPESQRTT IFSVCTVFEN 420
  421 CASNNEDAVP NELTPMLGRS NSQASVFLYQ KFVENGDTDF ADGYETKDID YYWGKKRTDL 480
  481 EITAVKFDTF QLPQFQPTLY FVNTTKAETS SGKYVRLALE VILVRNMGFY TMNIVIPSIL 540
  541 IVTISWVSFW LNREASPARV GLGVTTVLTM TTLITTTNNS MPKVSYVKGL DVFLNFCFVM 600
  601 VFASLLEYAI VSYMNKRLVL RREKRRKAAE QQQRNEMPMF NASPKAANNN ADLYFAGHNS 660
  661 SMNPLMEIPE NCDCRTIPMM QHPRLVTDGA HTLWPAPFAR PKKVNKLPRH AANDGRLQKS 720
  721 ISLADTVSHC LSLSSIVCLL FGLFPLTKFN CSSLLVVYEI SKLKLVGQDP GERQVAADPL 780
  781 VNTRDIIPPV PARHSKTFSL SYYFSPFSLL PPLYLPSAIG HVFCMLAVTK PPSRMTSSSS 840
  841 STSSTYAYST AEIEYKWCTS KEPNCSTAVK ADANIELSSY KFTKICQKRT LASTSSGTYS 900
  901 RLRVSFIFDR DSGFYFLQIF FPASLVVVLS WISFWINRDS APSRTLIGTM TVLTETHLMT 960
  961 GTNRRLPPVA YVKAVDVFLG FCYLLVILAL IEYACVAYSK KKNEDRRRRE KKTEHKPAPP1020
 1021 TPDILHDVRL AECTCNAAPT SIIAVIKQSN RFCVSHSHID IVSRAAFPLV FILFNTLFWL1080
 1081 ILLYKSKRLP YISEHEGDRC DAPDLH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle