YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acl-5
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.78
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFLVFWFLI LLLIFLAVTG KTLGLREYYV NTLVYIFEWG ATLNEQYEEE EGSVEEDMPE  60
   61 DFQHKKPRRS SSASDLGIIN REKSDIIDAK LHETNVPEAK QTTVSVLVDD TLDFITAGME 120
  121 AVIEDQVTNR FSAAQLPSWN LLSRTKYSFH FFNWQLTLLW IAGFMFRYYV LVPCRIALFG 180
  181 IAIVLMIVST SIIGLVPNAK VRKFLNRRCM LMCMRIYSRA FSSVIRFHDK ENRANKGGIC 240
  241 VANHTSPIDV MVLSCDNCYA MIGQKQAGFL GFLQTTLSRS EHHIWFERGE AGDRAKVMDR 300
  301 MREHVNDENK LPIIIFPEGT CINNTSVMMF KKGSFEIGST IYPIAVKYDT RLTDAFWNSS 360
  361 AQSYGRYLWS MMTSWAIICD VWYLPAMTRG ENEDSISFAK RVKRAIAKKG GLIDLEWDGA 420
  421 LKRERVSSKL VTLQQKLYFE RLARTTTLNA MLEEKSSDIL NIMQGISEEE RDELLKQIDE 480
  481 QDDEEEMIRK ISSLKPKFKI GDHDADEHIK SD

Type	Start	End	Confidence
Signal Peptide	1	20	0.78
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	150	0.77
Transmembrane Helix	151	170	0.90
Cytoplasmic	171	175	0.65
Transmembrane Helix	176	197	0.92
Non-Cytoplasmic	198	512	0.79