YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25354045
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMKTGRSCA PKGADHDFTL LSHSIPHHHL TILFGLTFVP KSFVILLVFF YCSLETMAQK  60
   61 SDISVETANA TSGKPNPPSP KSRLAMLKRT KKASNASSDP FRFQNNGISY KGKLIGEQDV 120
  121 DKARGDAMCA EAMRTAKSII KAAGAHKTRI TLQINIDGIK VLDEKSGAVL HNFPVSRISF 180
  181 IARDSSDARA FGLVYGEPGG KYKFYGIKTA QAADQAVLAI RDMFQVVFEM KKKQIEQVKQ 240
  241 QQIQDGGAEI SSKKEGGVAV ADLLDLESEL QQIERGVQQL STVPTNCDAF GASPFGDPFV 300
  301 DSFNSTATSN GTANMSGTQV PFGGLQLPQV QQMQMPMVQI PQQSHQNWPT SGAGSFDAWG 360
  361 QQQQQQQMHH AHSTPAFGTN GFSDTNPFAS AFNTQARHHH FQLLLQHNTV IHSLYIPLLF 420
  421 QIQILIGLEL GLRKRIWHHL LISNNSSHHC ITPALLPTLE IISEAETWSE KKVTSLEEAF 480
  481 TKLVDMDALV GGQGIKETKK NPFEHILNPP KASLNSMSTT CSAAQMAATQ QHTTSSHADP 540
  541 FGDDFFR

Type	Start	End	Confidence
Cytoplasmic	1	29	0.68
Transmembrane Helix	30	51	0.70
Non-Cytoplasmic	52	410	0.93
Transmembrane Helix	411	432	0.46
Cytoplasmic	433	547	0.52