YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVSMEENSK IQMLSATSKD KKVATDRSLL NKYHLGPLAL HTGLVLSCVT YALGGAYLFL  60
   61 SIEHPEELKR REKAIREFQD LKQQFMGNIT SGIENSEQSI EIYTKKLILM LEDAHNAHAF 120
  121 EYFFLNHEIP KDMWTFSSAL VFTTTTVIPV GYGYIFPVSA YGRMCLIAYA LLGIPLTLVT 180
  181 MADTGKFAAQ LVTRWFGDNN MAIPAAIFVC LLFAYPLVVG FILCSTSNIT YLDSVYFSLT 240
  241 SIFTIGFGDL TPDMNVIHMV LFLAVGVILV TITLDIVAAE MIDRVHYMGR HVGKAKELAG 300
  301 KMFQLAQSLN MKQGLVSGVG QLHALARFGM LVGREEVDKT QEDGIIAFSP DVMDGLEFMD 360
  361 TLSIYSRRSR RSAENSARNL FLS

Type	Start	End	Confidence
Cytoplasmic	1	36	0.59
Transmembrane Helix	37	60	0.84
Non-Cytoplasmic	61	132	0.60
Transmembrane Helix	133	156	0.85
Cytoplasmic	157	164	0.52
Transmembrane Helix	165	185	0.86
Non-Cytoplasmic	186	200	0.63
Transmembrane Helix	201	224	0.89
Cytoplasmic	225	228	0.61
Transmembrane Helix	229	248	0.66
Non-Cytoplasmic	249	255	0.74
Transmembrane Helix	256	278	0.91
Cytoplasmic	279	383	0.93