YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE02268
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIPDLTNYE HLIGGLCGGV TSTVVCHPFD LLKIRFSANE GSSLRPQYSS YADAVRKIVR  60
   61 VEGVRGLYQG WTPSLIGASL SWGLYFQWYN SLRTKIYENF STGSKLANNL ISGCISGSAI 120
  121 MCITNPIWLT KTRLCLQYEN QQSKKYAGMM DCLKKTVKQE GFFGLYRGFV TGVIGTTHGA 180
  181 VQIAAYSWII DKRCQSQGLP KDSFLSQTDY VIASSTSKVL ATTITFPYQV LRTRMQDHNT 240
  241 DSRGVWKTTL KTIHNEGIGG LWKGCLIANV RQLPAAVVTF LTYENVKRLV GMTKQI

Type	Start	End	Confidence
Cytoplasmic	1	66	0.61
Transmembrane Helix	67	86	0.83
Non-Cytoplasmic	87	105	0.64
Transmembrane Helix	106	129	0.73
Cytoplasmic	130	167	0.57
Transmembrane Helix	168	186	0.51
Non-Cytoplasmic	187	296	0.56