YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE02240
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.37
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPGNKSITI TPVVYLLLTF FHSVSGYALY REVEAEQFLN LAAAAYADAS NVTARQSCLD  60
   61 YAFPTDEFHV LMVMSTPCDR RGNQCQAFIA ISDSTNQVII SFRGTNSGGQ LLSEFGVGLE 120
  121 DYAAYTEIDG SNNTVSVGHV NVYFLDAMNQ MWEDMVQPSI KNRQNYTFLI TGHSLGGAMA 180
  181 TLTAFRIAFR QFSSRIKVHT FGEPRVGDTV FASYFTDMVP YAFRVVHNTD PIPHLPPLNV 240
  241 ANEAGPGMPY HHPREIWYND DFSNYVMCSD VNGEDWSCSD KKRFWNYGSK GAYRHTHYFN 300
  301 HFVSEYGALG CNSTPHKQTI LLSIFVPIFA IFSFYL

Type	Start	End	Confidence
Signal Peptide	1	26	0.47
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	166	0.86
Transmembrane Helix	167	189	0.71
Cytoplasmic	190	318	0.65
Transmembrane Helix	319	335	0.44
Non-Cytoplasmic	336	336	0.70