YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ram-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSADNEKKL WVEAESLRKV AFFGICISTV ATLTAIVAIP LLYNYMQHVQ STLQTEVDFC  60
   61 KHRTNGLFDQ YERMQQLKGV RGKLIVKRQA GYDAPADAAV QATTQSSGGS CCSCKAGASG 120
  121 PPGPPGTDGS DGKDGLSGPD GQPGADADPE ATPSEADFCF DCPAGPPGPA GNPGPKGPSG 180
  181 NAGADGQPGA PGNAGAAGAP GAPGPAGPDG QPGSTGQDGA PGVVEEVAVP AGPAGAPGPA 240
  241 GAPGADGAAG APGQPGQDGP QGPAGDAGSD GAAGQPGAAG EQGPAGEPGA GGGCDHCPPP 300
  301 RTAPGY

Type	Start	End	Confidence
Cytoplasmic	1	19	0.98
Transmembrane Helix	20	43	0.94
Non-Cytoplasmic	44	306	0.99