YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cut-3
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARYSLGLGL CLLVASVSAI PVDNNVEGEP EVECGPTSIT VNFNTRNAFE GHVYVKGLFD  60
   61 QQECRNDEGG RQVAGIELPF DTCNVARTRS LNPKGVFVTT TVVVSFHPQF VTKVDRAYRV 120
  121 QCFYMEADKT VSTQIEVSDL TTAFQTQVVP MPICKYEILN GGPTGEPVQF ATIGQQVYHK 180
  181 WTCDSETVDT FCAVVHSCTV DDGNGDTVQI LDENGCALDK FLLNNLEYPT DLMAGQEAHV 240
  241 YKYADRSQLF YQCQISITVK EPNEECARPT CSEPQGFGAV KQANQTAQFF RVLKKRSAPV 300
  301 MENILDVRAE LTTLEVLEGN LPSSLTQAQA LVASREIGED SFRQELCISS FHISVVTVFL 360
  361 GLTVFVAIFI TYMIVSRMMV PSDKMQSAC

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	350	0.99
Transmembrane Helix	351	375	0.91
Cytoplasmic	376	389	0.97