YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cut-1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWKPIICLA ALVLSASAIP VDNNVEGEPE VECGPNSITV NFNTRNPFEG HVYVKGLYDQ  60
   61 AGCRSDEGGR QVAGIELPFD SCNTARTRSL NPKGVFVSTT VVISFHPQFV TKVDRAYRIQ 120
  121 CFYMESDKTV STQIEVSDLT TAFQTQVVPM PVCKYEILDG GPSGQPIQFA TIGQQVYHKW 180
  181 TCDSETTDTF CAVVHSCTVD DGNGDTVQIL NEEGCALDKF LLNNLEYPTD LMAGQEAHVY 240
  241 KYADRSQLFY QCQISITIKD PGSECARPTC SEPQGFGAVK QAGAGGAHAA AAPQAGVEEV 300
  301 QAAPVAAAAP VAAPVAAAAA APAVPRATLA QLRLLRKKRS FGENEGILDV RVEINTLDIM 360
  361 EGASPSAPEA AALVSEESVR RRATSTGICL TPIGFASFLG IGTIVATALS ATIFYVARPT 420
  421 SHKH

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	387	0.89
Transmembrane Helix	388	416	0.80
Cytoplasmic	417	424	0.47