YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE02103
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQCVRSFVKN ETFNRNKILL VAFVARIILV FYAHIHDYLF KVNFTDIDYH VFSDAAKHVS  60
   61 NGGSPFDRAT YRYTPALAWI LLPVVHFPDF GKILFCIFDI LVAILYFKIM EKDLNETKSE 120
  121 TREEMKDDQT MNVVIYWLAN PLTAIISARG NAESIVAAVV LLNIVLLQKG YWKSAALVHG 180
  181 ALAIQLKIYP LIYLPSVFLS LSTIGEQSCV VNKFKSLVSN WKGFAYMLVT LTSFAAVVLF 240
  241 FFQIYGQLFL DEYLIYHVKR RDLAHNFSPY FYLLYLYEAN PTMSQIIGLG AFIPQIVLIV 300
  301 FFAFKHYDDL PFCWFITTFA FVTYNKVCTS QYFVWYIVLL PLLAHKIMMS RQLALSLMAA 360
  361 WFATQGIWLL AAYLFEFQGW NTFFLMFLAS CLFLIANSFI LKQIINHYVP IVKPKTD

Type	Start	End	Confidence
Cytoplasmic	1	17	0.90
Transmembrane Helix	18	36	0.94
Non-Cytoplasmic	37	88	0.94
Transmembrane Helix	89	109	0.87
Cytoplasmic	110	153	0.76
Transmembrane Helix	154	172	0.58
Non-Cytoplasmic	173	185	0.45
Transmembrane Helix	186	205	0.59
Cytoplasmic	206	222	0.66
Transmembrane Helix	223	245	0.91
Non-Cytoplasmic	246	281	0.71
Transmembrane Helix	282	304	0.86
Cytoplasmic	305	352	0.44
Transmembrane Helix	353	375	0.87
Non-Cytoplasmic	376	381	0.72
Transmembrane Helix	382	401	0.94
Cytoplasmic	402	417	0.79