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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7498564
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDENGPSKV DLQTAMRKMR ALPPNKLCFD CGARNPTWCT VTYGVFLCID CSAVHRNLGV  60
   61 HLTFVRSTNL DTNWTWLQLR AMQLGGNGNA NQFFKAHGCN TTEAQQKYKS RAAQMYRDKL 120
  121 STLCQEAQRK FGTQLIIDTV THAEEKPAEE EDFFAQDFGH TSASATSLSS DAYIADHKSE 180
  181 DSTHGPSVDH LDSSVAVPTS APVSVILKKP IKKATLGAKK NALGAQKVRI NFDEIEQRAA 240
  241 EKERQTAAEV AANKLAYQTE LDGKKKSDDA AALQKLSAKF AMQDIDAQRK QMEAKVAKDP 300
  301 TKAASVDRLG MGGVGRSRAA HSVAGGIRSI KQDDVLTFKK PSQPKEDDDW EVIDDKYGKK 360
  361 STNNEDDFFS KDYTSSSSKK TTKEDDFFDS FETQPVQKSR YTASSSSSST SRAPTTRLTA 420
  421 GASPISDVDL QKKFGNAKAI SSDMYFGTPE MDCETRSALT KCEGQTSFGS EDLWGNGSQQ 480
  481 RQSSQVPDMS DLKDSFRAGA SKVAEKWSTL SSSFSTYMSI IFSKPVLVTF WAVWENQEFF 540
  541 ISHLFSCFDF CVKLFMSRSI FFRIYMLAPV FQLLFPSIKM LFPSWNFSKF RIKSDKMQIK 600
  601 DDHDDAGSQS EDNGVPIYDS LESLLFIPRS MSKELSETAL RTQFLLDKWS NNRRKIVRQM 660
  661 EGIAEKLDNW EKGCAISTAV GSTVGIASGI AVIGGLILMP PVAIAGLIVG TASGVSNLAT 720
  721 GITKFFHTKG QHKEVAAMIA EDGVLFEELL KSREELMEAV RKIVEDEEFF KHFKNDGDIE 780
  781 NKLKTVFGGS VTGITGIGTR FAITSMGRLS SSLVKGVLHS VAVIGIVLDS VTLALSAKTL 840
  841 GEGSVSELGS SILEASSKME MMRQKVVKHF LNEDVWKDDD DVLSDRLIYK LQSDMSIYES 900
  901 LKSTLMNGEE MPKELQVKAW GAQWHLDRWS SNRQEIMNRM EEIAKDLDGL EKASAIATTV 960
  961 GSSVDIASGL AVFGGLFFMP PVAIAGLIVG AASGVSNVAT GVNKKLATDH KIREINRMLA1020
 1021 EDAKFFEELL HSRNDLLNEV RRFVEDKQSS KIFKNFDDVQ SHLKTLFGVS LAGITGFGIK1080
 1081 MAASSMGHLT NALMKGMLQS VAAIGIVLDG VTLAMSANTL KNGSSSELAG KIREASGKME1140
 1141 RMRHNVVTNF LNYDAWNSD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle