YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7496247
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKTNKNSAG TLRSHSKLCS QVSSRALRSV RCVSPCGSYS SGNSKQSFQF RISANNFKFQ  60
   61 PVPPQKCQPS SHWCSIRCAI IIVNNFFVFM YYIFLVLVNV SFLIFYNCVF LIFNGFIDYR 120
  121 FQMVRKMNKL AKRLASTSKS RQPEPESDSD GSEFDFDNAI EEKPMEAMDI EEVESDGDDD 180
  181 ERELQAAFAA GLLKDGLNIQ VAKKRPIINK SAEMKEKLAE ITKDLPWVET LEVVTPHSEM 240
  241 DKKVENDDFQ RELNFYKQAE KAVQIAYPRL LNLGIKVLRP TDYYAEMAKS DTHMQKVRKR 300
  301 LLGIQEMKER QEAFRRIREE KKFAVKVQKE VLAAKNTEKK NLAEAVKKHK KGMKQQLEDM 360
  361 LNNVKRHGLD QDDDAPTGAF GDRLGGRGGA GRGGAGRGGS MRNAGELKRK LKSDKFGYGG 420
  421 KKKGMKRNNK ESFNDLFGAP RGGFGGRGRG GGRGGRGGRG RR

Type	Start	End	Confidence
Cytoplasmic	1	72	0.98
Transmembrane Helix	73	95	0.84
Non-Cytoplasmic	96	101	0.70
Transmembrane Helix	102	121	0.86
Cytoplasmic	122	462	0.86