YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lact-2
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAMEDKGET EAENVVKLET GSSRRLLIYG IASILAVSGA WLVVATTVDS LACFIEGEMH  60
   61 LDNLVGHVAP GYEKVEKVFR RNFADGWERE GASITVYHKD RVIVDLQGGY ADKASGRKWT 120
  121 PDTRTVVFST TKAVGAVCVA MLVDRGHISY DDKMSKIWPE FAQNGKENIT IDWLMSHRAG 180
  181 LAALDMPITI EDANDFEKMS EVIASQKPNW EPGTKSGYHA ITYGWIVDQI VRRSDPKGRS 240
  241 VGRFFKEEVA DVHGIDFHIG LPPSEEHTVS RLSMPSTLHL VREIVHDPRV LIVLAVFNLR 300
  301 PPNSIARKIA ANPTWFKLEQ DVNTFNNPTL HAMEQVAALG ITKSRDLARL FSLVQQGKLF 360
  361 STELLEKFRA PQVQGIDEVV MTPLPKGHGF LYERHPMGGK KWLVGHPGYG GSTVMMDLED 420
  421 GITIAYVSNG LKTGMGELTR TYRHLRDSVF ECLEKQKTGQ SVMIEEAVQA VAA

Type	Start	End	Confidence
Cytoplasmic	1	25	0.92
Transmembrane Helix	26	45	0.90
Non-Cytoplasmic	46	473	0.98