YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE01726
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.86
Transmembrane Helix	12	34	0.85
Non-Cytoplasmic	35	104	0.91
Transmembrane Helix	105	127	0.80
Cytoplasmic	128	134	0.86
Transmembrane Helix	135	154	0.95
Non-Cytoplasmic	155	160	0.63
Transmembrane Helix	161	181	0.89
Cytoplasmic	182	194	0.82
Transmembrane Helix	195	213	0.85
Non-Cytoplasmic	214	217	0.82
Transmembrane Helix	218	237	0.87
Cytoplasmic	238	294	0.97
Transmembrane Helix	295	314	0.95
Non-Cytoplasmic	315	324	0.84
Transmembrane Helix	325	344	0.94
Cytoplasmic	345	356	0.85
Transmembrane Helix	357	378	0.94
Non-Cytoplasmic	379	386	0.81
Transmembrane Helix	387	407	0.66
Cytoplasmic	408	418	0.55
Transmembrane Helix	419	439	0.72
Non-Cytoplasmic	440	448	0.56
Transmembrane Helix	449	469	0.94
Cytoplasmic	470	541	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIPSGQWRL DVMMMCLYQM ALFFSAQLVF VIFLEYMPKT ACTEKNYCYK LESKCLSDYD  60
   61 ENKPNICLVP NGSKSQFDEC VNDKKYLYFE SAQHYYQQDC TSLTHYSAST NMYLGVLFAN 120
  121 LILGVLADKL GRRPIFFASI AIGVVSLILS AAIPSLIAFY IFRFTTGVGV AGAQIVGWSY 180
  181 GSEMISAKRR FQLRTFSNWA NARILVVFVA FITRRWDTAS YVCAAISALI FPILWKLPES 240
  241 PVFLEQKHRI EEANEAREQL AELCDMEYEE KEAAAINNLK KITFMDLWRN ERLRTNFLVL 300
  301 CFMWFFVGMA TYITDLNGAD MSTNLYVGQF LSGLLLTISK IIFGFAEPRF EWLGRRAIFL 360
  361 FSQGVAIIAY ILILVALVTS NKETTWYLIV YLCAYSFQAL ATETCYLSVA ELIPTDVRVT 420
  421 VAAITNICLR LGTIVASLTK PLKFSFEPGL FLINLIVCSI GITVVYFYLE ESRNVNLQHV 480
  481 GQDEEPSAED EHSKAMLNDS GEKSADDSGV ASTDNSALAT STDRRDEASE TEHSNTKSRV 540
  541 A