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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CE01720
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTLLEPPGA KRSPTVGNYN NRSAQHLLNL APEEDDLYET YEETEDYAEN EPTGNILTRF  60
   61 LDQYLVGQSS SADYNDRWKR EFRARPSWCD ADLCLQQMNR GKATGNRYAL YSRSLIQKLL 120
  121 FALGNTVHRN AWSIILAVSM IFAVCCYGLQ YVHIETDIVK LWVAQGGRLD EELNFLPNIK 180
  181 EAMRNVTGDS GPELPRENGL GGGYQVLIQT PEYEGQDALA AGPLLKHVEI MKHIASFNVS 240
  241 VHGVDWSLSD ICFKPAPPSV AADSAASSLG DVIDKIVPCI WITPIDCFWE GSKALGPHPS 300
  301 LPKSSLGPLG MLLSSLSDGD MIRWSDFDPI AVIDEIHRSF NLGSHYTFFE RAGVSHGYMD 360
  361 RPCIDPLDPE CPPMAKNYFD VCPHIDRVRE IAKKYGTELE EEKKKDSGYS FFDFLGRKKR 420
  421 EAGDQPKMIH PAQPADSIPT IEDAVPAQVP VSTAPIPTTT TLSPEEARAA EEKEKKQKAR 480
  481 ELKDYCKSYR KSAFEWLKKN KDKWPEVMSE NMYPQNVDYA AEMTGGCSGF ASNVLNWPED 540
  541 MILGNPRRAK KGGKLSGADA LQSVFLVASP ADVFLRFKQK PGRNSMKTGL DMDAWNETAA 600
  601 EQVLQAWQRN FTKSLYNHKA NVDEDGNERR TLHPLASTSI ADMLEEFCQF NYTIILAGYA 660
  661 LMLAYAIVTQ ARFDNCLPAT ESSMGLALAG VLVVTFASVA GLGLATWFGI EFNAATTQIV 720
  721 PFLTLGIGVD NMFMLLHNYR DVVKLAGGHA EMAILMRETG MSILCTSINN ILSFLTGTLL 780
  781 PIPALRSFCA QSSILLTFNF IAILTIYPAI ISIDLRRKKA QRRDLVCCLY GDTREESYSM 840
  841 ISKPKIQSKR IIGAPSEASI MQQFDGITQA QMASSDDPAP WSLHSFIRYY YIPFISKPAS 900
  901 KVAIIVGCCA LLGASFIGMR QSTLGLELGD VLPEHTAPAQ FLRARDKYFS FYPMFAVIKG 960
  961 PNIDYAHQQR QIDNYRQSIG SSKYVIKNKN EEPSEKYWLG LMRDWLISIQ RGFDEEVAKG1020
 1021 SFNLTSGTVI GSNVSEDARL AHALMCSHGS LFGCAGRVGK IRLVDASGII NSDGFYNYLT1080
 1081 AWFNVDHMMY YVSQASFFPT PPKWELSKNH TENFIPAAEP LAYSQIPFYL TGLTDTAVIV1140
 1141 DAIKDIRSVC ERFTDQGLPN FPQGIAFTFW EQYLFLTGNL MQAISIITIS VFCVISVLLF1200
 1201 NPWAALMVVC ILGIMTCELA GFMGLVGIKL NPVSAVTLIT AVGIGVEFTV HVVVSFLTAL1260
 1261 GTRSQRTSSA VDRVFVPVIH GSFSTLLGIL MLGFSEFEFV VKYFFIVMTA LICIGIINGL1320
 1321 ILLPVLLSWF GPRREISPTG GKTTLTLPPP LPKNANSSRS GGDDSDEDDE PSGLVMYSRQ1380
 1381 APPTTRTSGG NRGTVGNNTR RLPAV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle