YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sqv-8
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPSRLLEKW WLRAFIALVI FFVWQLFYAI NRVQSLEEER ATLQATIEVL TRKSDGLRTQ  60
   61 IFEKERNLVR LNGKVEEIDT QIRDHLSLLP RVNRSTPFIY FITPTHFRAA QRADLTRLSY 120
  121 TLSHVPNLHW IVVEDSDELT PSIAGILKRS KIPNTHLNAR TPSDQKMRYD DPNWTLPRGV 180
  181 EQRNRALLWI QNQLSGVKEG VVYFGDDDNT YDLKIFGEMR KVKNAGVWPV GIVGGMFVET 240
  241 PILEKNGSIS HFNAVWKPER PFPIDMAAFA VNISLVLSNA NALFSFDVPR GYQESTFLEN 300
  301 LGIHRYNMEP LAEMCTKVYV WHTRTEKPKL SKESIDRLTK KTGFNSLEAH ALGVDN

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	30	0.91
Non-Cytoplasmic	31	356	0.97