YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pssy-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	90	0.75
Transmembrane Helix	91	109	0.72
Non-Cytoplasmic	110	121	0.52
Transmembrane Helix	122	144	0.85
Cytoplasmic	145	151	0.46
Transmembrane Helix	152	173	0.90
Non-Cytoplasmic	174	213	0.52
Transmembrane Helix	214	235	0.48
Cytoplasmic	236	238	0.55
Transmembrane Helix	239	259	0.74
Non-Cytoplasmic	260	268	0.80
Transmembrane Helix	269	289	0.93
Cytoplasmic	290	338	0.93
Transmembrane Helix	339	359	0.86
Non-Cytoplasmic	360	370	0.78
Transmembrane Helix	371	392	0.92
Cytoplasmic	393	405	0.86
Transmembrane Helix	406	426	0.94
Non-Cytoplasmic	427	434	0.74
Transmembrane Helix	435	456	0.93
Cytoplasmic	457	507	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDVLGTPD NMTPRKRKNR SNNEQPEEMH LLDDRVGDAA ATTEAEADSD DESEKRVRRN  60
   61 KSRRQLESTH FQMVNERVVE DITVDFLYKP HTLTILGLLV VFISYKAFTG FTEEANATDR 120
  121 NVYDGLLGTL ALFLVVSALA FPNGPFIRPH PVFWRIVFGV SVVYLMLLQF TLFQTYTDIK 180
  181 TVLTWLDPKG LGNEDLVEKE YAINCSDVSL ERLWSHMDIF AVGHFTGWAM KALLIRHGVL 240
  241 CWYISIAWEL TEIVFTQLLP NFAECWWDAI ILDVLICNGL GIFAGLQICK WLSMRNFHWE 300
  301 SIKHIKTNRG RFKRMVMQFT PESWNDFDWG SFTVTIKRTM SVYVFVLIWL LTELNTFFMK 360
  361 HVFSVDTKHP VVFWRLILIA FISAPSIRQF YLYATDPLIK RLGMQCWVYL AVCALEAAIC 420
  421 VKFGIHMFPR VAITPIVIWI LFLIVGTFFS VWFSVWWAKR SSATTEIEID GENCDIYLDS 480
  481 SHENLGAIHD DVRRRRRDLG FSESDLN