YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE01674
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPKNYIKI SIDEKNDRRD NVTANENCSR NRIKKGIFVL IGICVVFAFA NNAMGHPAKE  60
   61 NDESSSEIPP IENDIASTTQ IIPTVPLLTD SSGSEKPPDK VTFVLFAADR IGFDGSVEVD 120
  121 HSSRTFSKLK EKSKIESSHF KKLLSIGGRS NTQFLPLVIA DPRRKRRFFK SIISILEEYQ 180
  181 LDGVDLLWKW AKNSNTKKCS RFLCELKQKL KERKKNYVLS VQILPDEPSS WELFNPANGS 240
  241 PLNIQVEDCN TGPDTEVVEP SDSELESTEN NSKKLTVDIF KFCYITSDGN LQFEDEIAMK 300
  301 LFLKLKEQAR SENLKLELIF KIDGRTNTFL FSSVILAHDK KRKFINSVIS FLKEYRLGNS 360
  361 DLIWKSTRSS FRVEYFRFLD EFKSEIKERK RNYILSKVVR PPLGFSL

Type	Start	End	Confidence
Cytoplasmic	1	35	0.89
Transmembrane Helix	36	56	0.85
Non-Cytoplasmic	57	407	0.99